PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT17138
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 213aa    MW: 23383.7 Da    PI: 4.5189
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT17138genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-141462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l+ ++++ G+g +W + ++++g++R++k+c++rw++yl
         EMT17138 14 RGPWSPEEDAMLKAYIEERGTGnNWIALPHKIGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-20565IPR009057Homeodomain-like
PROSITE profilePS5129419.261966IPR017930Myb domain
SMARTSM007171.3E-101364IPR001005SANT/Myb domain
PfamPF002491.7E-131462IPR001005SANT/Myb domain
SuperFamilySSF466891.2E-181588IPR009057Homeodomain-like
CDDcd001671.04E-81662No hitNo description
Gene3DG3DSA:1.10.10.603.5E-66687IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGRAPCCDKA TVKRGPWSPE EDAMLKAYIE ERGTGNNWIA LPHKIGLKRC GKSCRLRWLN  60
YLRPNIKHGD FTPEEDSTIC KLYISIGSSN NSNNNSNSSR SSSFDVTVAA EQGQSSSLND  120
QNLGGQQQME TTATMDGLAS PSSAGNSNIV TIEAELQELL YSATTTTTDS VVTQQGGVDW  180
WSYEQGRSPV NCWDFTPETS SVLQDYTSVV YDM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117883e-82AK111788.1 Oryza sativa Japonica Group cDNA clone:J023093J22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573606.16e-60PREDICTED: transcription factor RAX3
TrEMBLR7W7Q41e-159R7W7Q4_AEGTA; Transcription factor RAX3
STRINGMLOC_56989.21e-61(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3692822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.19e-51myb domain protein 84