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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT17138 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 213aa MW: 23383.7 Da PI: 4.5189 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.7 | 1.5e-14 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l+ ++++ G+g +W + ++++g++R++k+c++rw++yl EMT17138 14 RGPWSPEEDAMLKAYIEERGTGnNWIALPHKIGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-20 | 5 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.261 | 9 | 66 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-10 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-13 | 14 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.2E-18 | 15 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.04E-8 | 16 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-6 | 66 | 87 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MGRAPCCDKA TVKRGPWSPE EDAMLKAYIE ERGTGNNWIA LPHKIGLKRC GKSCRLRWLN 60 YLRPNIKHGD FTPEEDSTIC KLYISIGSSN NSNNNSNSSR SSSFDVTVAA EQGQSSSLND 120 QNLGGQQQME TTATMDGLAS PSSAGNSNIV TIEAELQELL YSATTTTTDS VVTQQGGVDW 180 WSYEQGRSPV NCWDFTPETS SVLQDYTSVV YDM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111788 | 3e-82 | AK111788.1 Oryza sativa Japonica Group cDNA clone:J023093J22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003573606.1 | 6e-60 | PREDICTED: transcription factor RAX3 | ||||
TrEMBL | R7W7Q4 | 1e-159 | R7W7Q4_AEGTA; Transcription factor RAX3 | ||||
STRING | MLOC_56989.2 | 1e-61 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP36928 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 9e-51 | myb domain protein 84 |